Basecalling and methylation analysis of nanopore data
Title: |
Basecalling and methylation analysis of nanopore data |
DNr: |
Berzelius-2024-37 |
Project Type: |
LiU Berzelius |
Principal Investigator: |
Ola Wallerman <ola.wallerman@imbim.uu.se> |
Affiliation: |
Uppsala universitet |
Duration: |
2024-02-02 – 2024-09-01 |
Classification: |
10610 |
Homepage: |
https://lindbladtohlab.org |
Keywords: |
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Abstract
We have generated nanopore data from several species and would like to use the A100 GPUs to update base- and metylation calls as well as train species specific basecalling models.